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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn055041 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | LBD | ||||||||
Protein Properties | Length: 172aa MW: 18820.6 Da PI: 8.1249 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.9 | 1.1e-40 | 13 | 112 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+l+r+C++ C +apyf +++pkkfa vhk+FGasnv+k+l+++ ee+r+da++slvyeAear+rdPvyG++g i lq+++ +l+++l+++++ Achn055041 13 SCAACKFLKRRCSPTCLFAPYFRSDEPKKFAQVHKVFGASNVSKILAEVAEEHRHDAVNSLVYEAEARLRDPVYGCIGAIAILQRKMVELQQDLDVARK 111 6*********************************************************************************************99987 PP DUF260 100 e 100 + Achn055041 112 R 112 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.925 | 12 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.0E-40 | 13 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MVKGGHEPRS SGSCAACKFL KRRCSPTCLF APYFRSDEPK KFAQVHKVFG ASNVSKILAE 60 VAEEHRHDAV NSLVYEAEAR LRDPVYGCIG AIAILQRKMV ELQQDLDVAR KRLARCAAGV 120 SPLSLLQDDQ FLVNSLSEFL PLVPGYSGWG EGFNQSGSSS MDELSQLLFP K* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002272821.1 | 2e-68 | PREDICTED: LOB domain-containing protein 21 | ||||
Swissprot | Q9SRL8 | 5e-60 | LBD21_ARATH; LOB domain-containing protein 21 | ||||
TrEMBL | D7T4L7 | 2e-68 | D7T4L7_VITVI; Putative uncharacterized protein | ||||
STRING | VIT_13s0067g01450.t01 | 5e-68 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11090.1 | 3e-61 | LOB domain-containing protein 21 |